Published Workflows | curtish | GBS722 VACV-WR 125k - sample denovo with BWASW to ref in hist

Galaxy Workflow ' GBS722 VACV-WR 125k - sample denovo with BWASW to ref in hist'

Annotation: Velvet denovo assembly, with BWA_SW mapping to in-history reference

StepAnnotation
Step 1: Input dataset
select at runtime
FASTA reference genome
Step 2: Input dataset
select at runtime
FASTQsanger FWD
Step 3: Input dataset
select at runtime
FASTQsanger REV
Step 4: velveth
Not available.
False
Input Files
Input Files 1
fastq
shortPaired reads
Output dataset 'output' from step 2
Input Files 2
fastq
shortPaired2 reads
Output dataset 'output' from step 3
Step 5: velvetg
Output dataset 'out_file1' from step 4
No
No
No
False
None
None
Yes
200
Yes
250
Use Defaults
Step 6: Unknown Tool with id 'bwasw_demo'
Step 7: SAM-to-BAM
Use a genome from the history
Output dataset 'output' from step 6
Output dataset 'output' from step 1
Step 8: Flagstat
Output dataset 'output1' from step 7