Step | Annotation |
---|---|
Step 1: Input dataset
select at runtime
|
Ref FASTA |
Step 2: Input dataset
select at runtime
|
FASTQsanger FWD |
Step 3: Input dataset
select at runtime
|
FASTQsanger REV |
Step 4: Input dataset
select at runtime
|
FASTQC Contamination List |
Step 5: Map with BWA for Illumina
Use one from the history
Output dataset 'output' from step 1
Paired-end
Output dataset 'output' from step 2
Output dataset 'output' from step 3
Commonly Used
False
|
|
Step 6: Unknown Tool with id 'fastqc_demo'
|
|
Step 7: Unknown Tool with id 'fastqc_demo'
|
|
Step 8: SAM-to-BAM
Use a genome from the history
Output dataset 'output' from step 5
Output dataset 'output' from step 1
|
|
Step 9: Unknown Tool with id 'sam_mpileup_view'
|
|
Step 10: Flagstat
Output dataset 'output1' from step 8
|
|
Step 11: Unknown Tool with id 'snpEff_demo'
|
curtish
All published workflows
Published workflows by curtish